====== Florian's postdoc projects  ======

  - **gene expression** microarray data, n=~1500
    * global analysis 
      * SCZ/BS vs. ctrl on 48000 probes
      * controlled for sex, age, bmi, waist, tobacco, cannabis, ...
      * [[https://github.com/precimed/phendap/tree/master/prj/171209_globexpr|Analysis]]
    * effect of lithium on gene expression (global analysis)
      * controlled for all other drugs (serum levels)
      * controlled for age, sex, diagnosis
    * relation of immune markers to gene expression levels
      * used data from immune phase I and II
      * [[https://github.com/precimed/phendap/tree/master/prj/180530_immusrc|Analysis]]
      * {{:biostat:180827_fkrull_mrnaprot.pdf|Results 2018-08-27}}
  - **disease regulome** - tool development (Eivind Hovig)
    * starting from Sandve2011 (code rewritten in C++)
    * integrated improved public datasets for genes and TFBS
    * implemented fast, interactive visualization 
    * TODO: visualize gene list within any cluster
    * [[https://github.com/precimed/gcop/tree/master/src/prj/hmview|Code]]
    * [[https://github.com/precimed/gcop/tree/master/src/prj/disreg|Code]]
  - **technical infrastructure**
    * TSD infrastructure 
      * advising on hardware and software
      * organizing meetings
    * wiki
      * infrastructure to document data and procedures
      * [[https://github.com/precimed/norment-wiki|Code]]
    * github on TSD (gitea)
      * infrastructure for code development on TSD
      * [[https://github.com/precimed/tsdtools/tree/master/src/gitea|Code]]
    * database tool
      * infrastructure for inhouse data
      * idea: easy-to-use web interface on TSD for:
        * sharing data
        * annotating data
        * obtaining data
      * [[https://github.com/precimed/noda|Code]]
  - **other analyses**
    * immune phase III pre-analyses
      * [[https://github.com/precimed/phendap/tree/master/prj/181011_immuov|Analysis]]
    * tryggve2 analyses

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