====== Code on github and TSD ======

===== Code on github.com/precimed =====


We host our code on GitHub at organizational account "precimed" (Precision Medicine).

https://github.com/precimed/

Some tools are made publicly available. Most tools are kept in private repositories, including some of our internal tools and also code for ongoing methods development. To setup you access please send your github account to Oleksandr Frei <oleksandr.frei@medisin.uio.no>. 

If you do not have an existing github account, please create one here:
https://github.com/join

Feel free to create your personal private repositories under https://github.com/precimed/ . This is free --- precimed organization has been granted unlimited private repositories plan.

Most important repositories are:

  * https://github.com/precimed/python_convert --- python tools to work with GWAS summary statistics

  * https://github.com/precimed/pleiotropy_cnd_conj -- matlab code for conditional / conjunctive pleiotropy-enriched false discovery rate method

We ask all users to put their real name on GitHub page (account sometimes is too cryptic). But just in case, the list below explains who is who...

  * andersmdale - Anders M. Dale
  * areewitoelar - Aree Witoelar
  * checco74 - Francesco Bettella
  * chunchiehfan - Chun Chieh Fan
  * danielroelfs - Daniel Roelfs
  * denvdm - Dennis van der Meer
  * dominicholland - Dominic Holland
  * dsquintana - Dan Quintana
  * dunkelbunt - Claudia Barth
  * espenhgn - Espen Hagen
  * f-krull - Florian Krull
  * idaElken - Ida Elken Sønderby
  * interCM - Alexey A. Shadrin
  * ksoconnell - Kevin O`Connell
  * oaandreassen - Ole A. Andreassen
  * ofrei - Oleksandr Frei
  * olavsmeland - Olav B. Smeland
  * osmanga - Osman Gani
  * pengYW - Yunpeng Wang
  * saurabhs87 - Saurabh Srinivasan
  * shahramb160 - Shahram Bahrami
  * smaeland - Steffen Maeland
  * srdjan7 - Srdjan Djurovic
  * statarat - Solveig Brunstad 
  * steen321 - Nils Eiel Steen
  * tirilgurholt - Tiril Gurholt
  * vssundar - Sundar Velkur

Collaborators:

  * giulio.pergola - Giulio Pergola (giulio.pergola at uniba.it)
  * ashwin - Ashwin Ashok Kumar Sreelatha (ashwin.ashok-kumar-sreelatha at uni-tuebingen.de)
  * irisbroce - Iris Broce (Iris.Broce at ucsf.edu)
  * Kyoko-wtnb - Kyoko Watanabe (k.watanabe at vu.nl)

===== Code on TSD (gitea) =====

Within TSD we use [[https://gitea.io/en-us/|gitea]] system for code version control. It's very similar to github.

To access, login to TSD, open a browser inside TSD, and go to:

  http://p33-webserver.tsd.usit.no

